2023

Aceituno, Pau Vilimelis and Farinha, Matilde Tristany and Loidl, Reinhard and Grewe, Benjamin F. Learning cortical hierarchies with temporal Hebbian updates, Frontiers in Computational Neuroscience, 2023
Anja T. Zai, Anna E. Stepien, Nicolas Giret, Richard R.H. Hahnloser Goal-directed vocal planning in a songbird, eLife, 12:(RP90445), 2023
Corinna Lorenz, Xinyu Hao, Tomas Tomka, Linus Ruettimann, Richard Hahnloser Interactive extraction of diverse vocal units from a planar embedding without the need for prior sound segmentation, Front. Bioinform, 2:966066:, 2023
Gu, Nianlong and Lee, Kanghwi and Basha, Maris and Ram, Sumit Kumar and You, Guanghao and Hahnloser, Richard H. R. Positive Transfer of the Whisper Speech Transformer to Human and Animal Voice Activity Detection, bioRxiv, 2023
Jörg Rychen, Alexander Eckerle, Xintong Liu, and Stefan Schucker Underwater sounds, including killer whale and humpback whale vocalizations, recorded in northern Norway in January 2023, Zenodo, 2023
Jörg Rychen, Patrick Paitz, Pascal Edme, Krystyna Smolinski, Joeri Brackenhoff, Andreas Fichtner Test experiments with distributed acoustic sensing and hydrophone arrays for locating underwater sound sources, arXiv, 2023
Nianlong Gu, Yingqiang Gao, Richard H.R. Hahnloser MemSum-DQA: Adapting An Efficient Long Document Extractive Summarizer for Document Question Answering, arXiv preprint, 2023
Rychen, Jörg and Semoroz, Julie and Eckerle, Alexander and Hahnloser, Richard HR and Kleinberger, Rébecca Full-duplex acoustic interaction system for cognitive experiments
with cetaceans, Interaction Studies 66-86, 2023
Schulthess, Lukas, Steven Marty, Matilde Dirodi, Mariana D. Rocha, Linus Rüttimann, Richard HR Hahnloser, Michele Magno TinyBird-ML: An Ultra-low Power Smart Sensor Node for Bird Vocalization Analysis and Syllable Classification, Conference: 56th IEEE International Symposium on Circuits and Systems (ISCAS), 2023
Sumit Kumar; B. Anshuman; Linus Rüttimann; Richard H.R. Hahnloser; Vipul Arora Balanced Deep CCA for Bird Vocalization Detection, IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2023
Tomka, Tomas and Hao, Xinyu and Miao, Aoxue and Lee, Kanghwi and Basha, Maris and Reimann, Stefan and Zai, Anja T. and Hahnloser, Richard H. R. Benchmarking nearest neighbor retrieval of zebra finch vocalizations across development, bioRxiv, 2023
Yingqiang Gao, Jessica Lam, Nianlong Gu, Richard H.R. Hahnloser GreedyCAS: Unsupervised Scientific Abstract Segmentation with Normalized Mutual Information, Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing 6093-6108, 2023

2022

Anja T. Zai, Anna E. Stepien, Sophie Cavé-Lopez, Nicolas Giret, Richard R.H. Hahnloser Goal-directed vocal planning in a songbird, bioRxiv, 2022
H Toutounji, AT Zai, O Tchernichovski, RHR Hahnloser, D Lipkind Learning the action inventory of a complex skill via an intrinsic reward, bioRxiv, 2022
Jörg Rychen, Julie Semoroz, Alexander Eckerle, Richard H.R. Hahnloser, Rébecca Kleinberger Full-duplex acoustic interaction system for cognitive experiments with cetaceans, bioRxiv, 2022
L. Rüttimann, J. Rychen, T. Tomka, H. Hörster, M. D. Rocha, R.H.R. Hahnloser Multimodal system for recording individual-level behaviors in songbird groups, biorxiv, 2022
Markus Marks, Qiuhan Jin, Oliver Sturman, Lukas von Ziegler, Sepp Kollmorgen, Wolfger von der Behrens, Valerio Mante, Johannes Bohacek & Mehmet Fatih Yanik Deep-learning-based identification, tracking, pose estimation and behaviour classification of interacting primates and mice in complex environments, Nature Machine Intelligence , 4: 331-340, 2022
Nianlong Gu, Elliott Ash, Richard H.R. Hahnloser MemSum: Extractive Summarization of Long Documents using Multi-step Episodic Markov Decision Processes, Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (ACL 2022), 2022
Nianlong Gu, Yingqiang Gao, and Richard H.R. Hahnloser Local Citation Recommendation with Hierarchical-Attention Text Encoder and SciBERT-based Reranking, Proceedings of 44th European Conference on Information Retrieval, 2022
Yingqiang Gao, Nianlong Gu, Jessica Lam, Richard H.R. Hahnloser Do Discourse Indicators Reflect the Main Arguments in Scientific Papers?, International Conference on Computational Linguistics 34-50, 2022 pdf

2021

Bektaş, Kenan and Thrash, Tyler and van Raai, Mark A. and Künzler, Patrik and Hahnloser, Richard The systematic evaluation of an embodied control interface for virtual reality, PLOS ONE e0259977, 2021
Conners, Melinda G. and Michelot, Théo and Heywood, Eleanor I. and Orben, Rachael A. and Phillips, Richard A. and Vyssotski, Alexei L. and Shaffer, Scott A. and Thorne, Lesley H. Hidden Markov models identify major movement modes in accelerometer and magnetometer data from four albatross species, Movement Ecology, 2021
Gwendolin Schoenfeld, Sepp Kollmorgen, Christopher Lewis, Philipp Bethge, Anna-Maria Reuss, Adriano Aguzzi, Valerio Mante, and Fritjof Helmchen Dendritic integration of sensory and reward information facilitates learning, bioRxiv, 2021
Harding, Edward C. and Ba, Wei and Zahir, Reesha and Yu, Xiao and Yustos, Raquel and Hsieh, Bryan and Lignos, Leda and Vyssotski, Alexei L. and Constandinou, Timothy and Franks, Nicholas P. and Wisden, William Nitric oxide synthase neurons in the preoptic hypothalamus are sleep-active and contribute to regulating NREM and REM sleep and lowering body temperature, 2021
Harding, Edward C. and Ba, Wei and Zahir, Reesha and Yu, Xiao and Yustos, Raquel and Hsieh, Bryan and Lignos, Leda and Vyssotski, Alexei L. and Merkle, Florian T. and Constandinou, Timothy G. and Franks, Nicholas P. and Wisden, William Nitric Oxide Synthase Neurons in the Preoptic Hypothalamus Are NREM and REM Sleep-Active and Lower Body Temperature, Frontiers in Neuroscience, 2021
J. Rychen, D.I. Rodrigues, T. Tomka, L. Rüttimann, H. Yamahachi and R.H.R. Hahnloser A system for controlling vocal communication networks., Scientific Reports, 11:(1) 15, 2021
Johnsson, Robin D and Connelly, Farley and Vyssotski, Alexei L and Roth, Timothy C and Lesku, John A Homeostatic regulation of NREM sleep, but not REM sleep, in Australian magpies, Sleep, 2021
Karla Burelo, Mohammadali Sharifshazileh, Niklaus Krayenbühl, Georgia Ramantani, Giacomo Indiveri, Johannes Sarnthein A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG, Scientific Reports, 11:(1) 1-10, 2021
M Marks, J Qiuhan, O Sturman, L von Ziegler, S Kollmorgen, W von der Behrens, V Mante, J Bohacek, MF Yanik Deep-learning based identification, pose estimation and end-to-end behavior classification for interacting primates and mice in complex environments, bioRxiv 1-33, 2021
Mohammadali Sharifshazileh*, Karla Burelo*, Johannes Sarnthein, Giacomo Indiveri An electronic neuromorphic system for real-time detection of high frequency oscillations (HFO) in intracranial EEG, Nature Communications, 12:(1) 1-14, 2021
Narula, G. and Hahnloser, R.H.R. Songbirds are excellent auditory discriminators, irrespective of age and experience, Animal Behaviour 123-135, 2021
Rychen, J. and Rodrigues, D. I. and Tomka, T. and Rüttimann, L. and Yamahachi, H. and Hahnloser, R. H. R. A system for controlling vocal communication networks, Scientific Reports, 2021
Stefan Reimann Computing with Cognitive States, arXiv Quantitative Biology, 2021
van Hasselt, Sjoerd J. and Hut, Roelof A. and Allocca, Giancarlo and Vyssotski, Alexei L. and Piersma, Theunis and Rattenborg, Niels C. and Meerlo, Peter Cloud cover amplifies the sleep-suppressing effect of artificial light at night in geese, Environmental Pollution 116444, 2021

2020

Amanda Monte, Alexander F. Cerwenka, Bernhard Ruthensteiner, Manfred Gahr & Daniel N. Düring The hummingbird syrinx morphome: a detailed three-dimensional description of the black jacobin’s vocal organ, BMC Zoology, 2020
Anja T. Zai, Sphie Cave-Lopez, Manon Rolland, Nicolas Giret, Richard H.R. Hahnloser Sensory substitution reveals a manipulatin bias, Nature Communications, 11:(5940), 2020
Aulsebrook AE, Connelly F, Johnsson RD, Jones TM, Mulder RA, Hall ML, Vyssotski AL, Lesku JA. White and Amber Light at Night Disrupt Sleep Physiology in Birds. , Curr. Biol., 30:(18), 2020
Connelly F, Johnsson RD, Aulsebrook AE, Mulder RA, Hall ML, Vyssotski AL, Lesku JA. Urban noise restricts, fragments, and lightens sleep in Australian magpies. , Environ Pollut. , 2020
Düring, DN and Dittrich, F and Rocha, MD and Tachibana, RO and Mori, C and Okanoya, K and Boehringer, R and Ehret, B and Grewe, BF and Rauch, M and Paterna, JC and Kasper, R and Gahr, M and Hahnloser, RHR Fast retrograde access to projection neuron circuits underlying vocal learning in songbirds, Cell Reports, 2020
Hannah Joy Kriesell, Céline Le Bohec, Alexander F. Cerwenka, Moritz Hertel, Jean-Patrice Robin, Bernhard Ruthensteiner, Manfred Gahr, Thierry Aubin & Daniel Normen Düring Vocal tract anatomy of king penguins: morphological traits of two-voiced sound production, Frontiers in Zoology, 2020
Homare Yamahachi, Anja T. Zai, Ryosuke O. Tachibana, Anna E. Stepien, Diana I. Rodrigues, Sophie Cavé-Lopez, Corinna Lorenz, Ezequiel M. Arneodo, Nicolas Giret, Richard H.R. Hahnloser Undirected singing rate as a non-invasive tool for welfare monitoring in isolated male zebra finches, PLOS ONE, 2020
Marks, Markus and Qiuhan, Jin and Sturman, Oliver and von Ziegler, Lukas and Kollmorgen, Sepp and von der Behrens, Wolfger and Mante, Valerio and Bohacek, Johannes and Yanik, Mehmet Fatih SIPEC: the deep-learning Swiss knife for behavioral data analysis, 2020
Nikola I. Nikolov, Richard H.R. Hahnloser Abstractive Document Summarization without Parallel Data, LREC 2020, 2020
Onur Gokce, Jonathan Prada, Nikola I. Nikolov, Nianlong Gu, Richard H.R. Hahnloser Embedding-based Scientific Literature Discovery in a Text Editor Application, Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics (ACL 2020), Demo papers., 2020
Padovani L, Tesoriero C, Vyssotski A, Bentivoglio M, Chiamulera C. Hippocampal gamma oscillations by sucrose instrumental memory retrieval in rats across sleep/wake cycle. , Neurosci Lett. , 2020
Sepp Kollmorgen, Richard Hahnloser, Valerio Mante Nearest neighbours reveal fast and slow components of motor learning, Nature, 2020
Yingqiang Gao, Nikola I. Nikolov, Yuhuang Hu, Richard H.R. Hahnloser Character-level Translation with Self-attention, Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics (ACL 2020), 2020
Yu X, Ba W, Zhao G, Ma Y, Harding EC, Yin L, Wang D, Li H, Zhang P, Shi Y, Yustos R, Vyssotski AL, Dong H, Franks NP, Wisden W. Dysfunction of ventral tegmental area GABA neurons causes mania-like behavior. , Mol Psychiatry, 2020
van Hasselt SJ, Mekenkamp GJ, Komdeur J, Allocca G, Vyssotski AL, Piersma T, Rattenborg NC, Meerlo P. Seasonal variation in sleep homeostasis in migratory geese: a rebound of NREM sleep following sleep deprivation in summer but not in winter. , Sleep, 2020
van Hasselt SJ, Rusche M, Vyssotski AL, Verhulst S, Rattenborg NC, Meerlo P. The European starling (Sturnus vulgaris) shows signs of NREM sleep homeostasis but has very little REM sleep and no REM sleep homeostasis. , Sleep, 43:(6), 2020
van Hasselt SJ, Rusche M, Vyssotski AL, Verhulst S, Rattenborg NC, Meerlo P. Sleep Time in the European Starling Is Strongly Affected by Night Length and Moon Phase. , Curr. Biol., 30:(9), 2020

2019

Balagurusamy, V. S. K., Cabral, C., Coomaraswamy, S., Delamarche, E., Dillenberger, D. N., Dittmann, G., Friedman, D., Gökçe, O., Hinds, N., Jelitto, J., Kind, A., Kumar, A. D., Libsch, F., Ligman, J. W., Munetoh, S., Narayanaswami, C., Narendra, A., Paidimarri, A., Delgado, M. A. P., Rayfield, J., Subramanian, C. & Vaculin, R. Crypto Anchors, IBM Journal of Research and Development, 63:(2/3) 4:1–4:12, 2019
Braun, S., Neil, D., Anumula, J.,. Ceolini, E., and Liu, S-C. Attention-driven multi-sensor selection, 2019 IEEE International Joint Conference on Neural Networks (IJCNN), 2019
Ceolini, E., Anumula, J.,. Braun, S., and Liu, S-C. Event-driven pipeline for low latency low compute keyword spotting and speaker verification system, 2019 International Conference on Acoustics, Speech and Signal Processing, 2019
Daliparthi, Vamsi K and Tachibana, Ryosuke O and Cooper, Brenton G and Hahnloser, Richard HR and Kojima, Satoshi and Sober, Samuel J and Roberts, Todd F Transitioning between preparatory and precisely sequenced neuronal activity in production of a skilled behavior, eLife, 2019
Düring, Daniel Normen and Rocha, Mariana Diales and Dittrich, Falk and Gahr, Manfred and Hahnloser, Richard Hans Robert Expansion Light Sheet Microscopy Resolves Subcellular Structures in Large Portions of the Songbird Brain, Frontiers in Neuroanatomy, 2019
G Koppe, H Toutounji, P Kirsch, S Lis, D Durstewitz Identifying nonlinear dynamical systems via generative recurrent neural networks with applications to fMRI, PLoS Computational Biology, 15:(8) e1007263, 2019
Gao, C., Braun, S., Kiselev, I., Anumula, J., Delbruck, T., Liu, S-C. Real-Time Speech Recognition for IoT Purpose Using a Delta Recurrent Neural Network Accelerator, 2019 IEEE International Symposium on Circuits and Systems (ISCAS), 2019
Gao, C., Braun, S., Kiselev, I., Anumula, J., Delbruck, T., Liu, S-C. Live Demonstration: Real-Time Spoken Digit Recognition Using the DeltaRNN Accelerator, 2019 IEEE International Symposium on Circuits and Systems (ISCAS), 2019
Gökçe, O, Castonguay, S, Temiz, Y, Gervais, T, Delamarche, E Self-coalescing flows in microfluidics for pulse-shaped delivery of reagents, Nature, 574:(7777) 228-232, 2019
Huber, A., Anumula, J.,. and Liu, S-C. Optimal sampling of parametric families: Implications for machine learning, Neural Computation, 2019
Kollmorgen, Sepp and Hahnloser, Richard and Mante, Valerio Neighborhood-statistics reveal complex dynamics of song acquisition in the zebra finch, 2019
Magno, Michele and Vultier, Fabien and Szebedy, Bence and Yamahachi, Homare and Hahnloser, Richard H. R. and Benini, Luca A Bluetooth-Low-Energy Sensor Node for Acoustic Monitoring of Small Birds, IEEE Sensors Journal 425-433, 2019
Mehran Ganji, Angelique C Paulk, Jimmy C Yang, Nasim W Vahidi, Sang Heon Lee, Ren Liu, Lorraine Hossain, Ezequiel M Arneodo, Martin Thunemann, Michiko Shigyo, Atsunori Tanaka, Sang Baek Ryu, Seung Woo Lee, Youngbin Tchoe, Martin Marsala, Anna Devor, Daniel R Cleary, Joel R Martin, Hongseok Oh, Vikash Gilja, Timothy Q Gentner, Shelley I Fried, Eric Halgren, Sydney S Cash, Shadi A Dayeh Selective Formation of Porous Pt Nanorods for Highly Electrochemically Efficient Neural Electrode Interfaces, Nano letters, 19:(9) 6244-6254, 2019 pdf
Mohammadali Sharifshazileh, Karla Burelo, Tommaso Fedele, Johannes Sarnthein, Giacomo Indiveri A Neuromorphic Device for Detecting High-Frequency Oscillations in Human iEEG, IEEE International Conference on Electronics Circuits and Systems, 2019 pdf
Nikola I. Nikolov, Alessandro Calmanovici, Richard H.R. Hahnloser Summary Refinement through Denoising, Proceedings of RANLP, 2019
Nikola I. Nikolov, Richard H.R. Hahnloser Large-scale Hierarchical Alignment for Data-driven Text Rewriting, Proceedingings of RANLP, 2019
Rocha, Mariana Diales and Düring, Daniel Normen and Bethge, Philipp and Voigt, Fabian F. and Hildebrand, Staffan and Helmchen, Fritjof and Pfeifer, Alexander and Hahnloser, Richard Hans Robert and Gahr, Manfred Tissue Clearing and Light Sheet Microscopy: Imaging the Unsectioned Adult Zebra Finch Brain at Cellular Resolution, Frontiers in Neuroanatomy, 2019
Zai, AT and Cavé-Lopez, S and Rolland, M and Giret, N and Hahnloser, RHR Sensory substitution reveals a manipulation bias, 2019

2018

Anumula, J., Ceolini, E., He, Z., Huber, A., and Liu, S-C. An event-driven probabilistic model of sound source localization using cochlea spikes, 2018 IEEE International Symposium on Circuits and Systems, 2018
Anumula, J., Neil, D., Delbruck, T., and Liu, S-C. Feature representations for neuromorphic audio spike streams, Front. Neurosci.: Special Issue on Bio-Inspired Audio Processing, Models and Systems, 2018
Braun, S. and Neil, D. and Anumula, J. and Ceolini, E. and Liu, S-C. Multi-channel attention for end-to-end speech recognition, 2018 Interspeech, 2018
Ezequiel M. Arneodo, Kristina B. Penikis, Neil Rabinowitz, Angela Licata, Annika Cichy, Jingji Zhang, Thomas Bozza & Dmitry Rinberg Stimulus dependent diversity and stereotypy in the output of an olfactory functional unit, Nature Communications, 9: 1347, 2018
Huang, Ziqiang and Khaled, Houda G and Kirschmann, Moritz and Gobes, Sharon MH and Hahnloser, Richard HR Excitatory and inhibitory synapse reorganization immediately after critical sensory experience in a vocal learner, eLife, 2018
Narula G., Herbst J.A., Rychen J., Hahnloser R.H.R Learning auditory discriminations from observation is efficient but less robust than learning from experience, Nature Communications, 9:, 2018
Nikola I. Nikolov, Michael Pfeiffer, Richard H.R. Hahnloser Data-driven Summarization of Scientific Articles, Proc. of the 7th International Workshop on Mining Scientific Publications, LREC 2018, 2018
Nikola I. Nikolov, Yuhuang Hu, Mi Xue Tan, Richard H.R. Hahnloser Character-level Chinese-English Translation through ASCII Encoding, Proceedings of the Third Conference on Machine Translation (WMT18), EMNLP 2018, Volume 1: Research Papers:, 2018

2017

A. Canopoli, A.T. Zai, R.H.R.Hahnloser Bilateral neurotoxic lesions in NCM before tutoring onset do not prevent successful tutor song learning, Science Matters, 2017
A. Jovalekic, S. Cavé-Lopez, A. Canopoli, J.M. Ondracek, A. Nager, A.L. Vyssotski, and R.H.R. Hahnloser A lightweight feedback-controlled microdrive for chronic neural recordings, Journal of Neural Engineering, 14:, 2017
Anumula, J., Neil, D., Xiaoya Li, X., Delbruck, T., and Liu, S-C. Live Demonstration: Event-Driven Real-Time Spoken Digit Recognition System, Circuits and Systems (ISCAS), 2017 IEEE International Symposium on, 2017
Brent K. Young, Gabriel B. Mindlin, Ezequiel Arneodo, Franz Goller Adult zebra finches rehearse highly variable song patterns during sleep, PeerJ, 5: e4052, 2017
D. Lipkind, A.T. Zai, A. Hanuschkin, G.F. Marcus, O. Tchernichovski, R.H.R. Hahnloser Songbirds work around computational complexity by learning song vocabulary independently of sequence., Nature Communication, 8:(2147), 2017
DN Düring, BJ Knörlein, CPH Elemans In situ vocal fold properties and pitch prediction by dynamic actuation of the songbird syrinx, Scientific Reports, 1:(1) 11296, 2017
Homare Yamahachi, Anja T. Zai, Ryosuke O. Tachibana, Anna E. Stepien, Diana I. Rodrigues, Sophie Cavé-Lopez, Gagan Narula, Juneseung Lee, Ziqiang Huang, Heiko Hörster, Daniel Düring, Richard H. R. Hahnloser Welfare of zebra finches used in research, bioRxiv, 2017 pdf
Lenka Seillier, Corinna Lorenz, Katsuhisa Kawaguchi, Torben Ott, Andreas Nieder, Paria Pourriahi, Hendrikje Nienborg Serotonin decreases the gain of visual responses in awake macaque V1, Journal of Neuroscience, 37:(47) 11390-11405, 2017
Richard H. R. Hahnloser, Gagan Narula A Bayesian Account of Vocal Adaptation to Pitch-Shifted Auditory Feedback, PLOS ONE 1-13, 2017
S. Fattinger, T.T. de Beukelaar, K.L. Ruddy, C. Volk, N.C. Heyse, R.H.R Hahnloser, J.A. Herbst, N. Wenderoth, R. Huber Deep sleep maintains learning efficiency of the human brain, Nature Communications, 8:(15405), 2017

2016

A. Canopoli, A.T. Zai, R.H.R. Hahnloser. Lesions of a higher auditory brain area during a sensorimotor period do not impair birdsong learning. , Science Matters, 15.3:, 2016
A.L. Vyssotski, G.B. Keller, A.E. Stepien, R.H.R. Hahnloser. A neural code that is isometric to vocal output and correlates with its sensory consequences. , PLOS Biology, 14:(10), 2016
G. Lynch, T.S. Okubo, A. Hanuschkin, R.H.R. Hahnloser, M.S. Fee. Rhythmic continuous-time coding in the songbird analog of vocal motor cortex. , Neuron, 90: 877-892, 2016
Nair J, Klaassen AL, Poirot J, Vyssotski A, Rasch B, Rainer G. Gamma band directional interactions between basal forebrain and visual cortex during wake and sleep states, J Physiol Paris, 110:(1-2) 19-28, 2016
Rattenborg NC, Voirin B, Cruz SM, Tisdale R, Dell'Omo G, Lipp HP, Wikelski M, Vyssotski AL. Evidence that birds sleep in mid-flight, Nature Communications, 7: 1-9, 2016
Riday, C., Bhargava, S., Hahnloser, R. H. R., and Liu, S-C. Monaural Source Separation Using a Random Forest Classifier, Proceedings of Interspeech 2016 3344-3348, 2016
Thomas Templier, Kenan Bektas, Richard H. R. Hahnloser Eye-Trace: Segmentation of Volumetric Microscopy Images with Eyegaze, CHI '16 Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems 5812-5823, 2016
Uygun DS, Ye Z, Zecharia AY, Harding EC, Yu X, Yustos R, Vyssotski AL, Brickley SG, Franks NP, Wisden W. Bottom-Up versus Top-Down Induction of Sleep by Zolpidem Acting on Histaminergic and Neocortex Neurons, J. Neurosci, 36:(44) 11171-11184, 2016

2015

Bhargava, S. and Blaettler, F. and Kollmorgen, S. and Liu, S.-C. and Hahnloser, R. H. Linear methods for efficient and fast separation of two sources recorded with a single microphone, Neural Computation, 22:(10), 2015
Haenzi, S. and Stefanics, G. and Lanaras, T. and Calcagni, M. and Ghosh, A., Botulinum Toxin-A dose dependent perceptual loss on the hand after its cosmetic use on the face, Cortex, 63:, 2015
Hahnloser, Richard Measurement and control of vocal interactions in songbirds, Journal of the Acoustical Society of America, 137:(4), 2015
Shine, Richard and Amiel, Joshua and Munn, Adam J. and Stewart, Mathew and Vyssotski, Alexei L. and Lesku, John A. Is “cooling then freezing” a humane way to kill amphibians and reptiles?, Biology Open 1-4, 2015
Yu, Xiao and Ye, Zhiwen and Houston, Catriona M. and Zecharia, Anna Y. and Ma, Ying and Zhang, Zhe and Uygun, David S. and Parker, Susan and Vyssotski, Alexei L. and Yustos, Raquel and Franks, Nicholas P. and Brickley, Stephen G. and Wisden, William Wakefulness Is Governed by GABA and Histamine Cotransmission, Neuron, 87:(1) 164-178, 2015
Zai, A and Bhargava, S and Mesgarani, N and Liu, S. Reconstruction of audio waveforms from spike trains of artificial cochlea models, Frontiers in Neuroscience, 2015
Zhang, Zhe and Ferretti, Valentina and Guentan, Ilke and Moro, Alessandro and Steinberg, Eleonora A and Ye, Zhiwen and Zecharia, Anna Y and Yu, Xiao and Vyssotski, Alexei L and Brickley, Stephen G and Yustos, Raquel and Pillidge, Zoe E and Harding, Edward C and Wisden, William and Franks, Nicholas P Neuronal ensembles sufficient for recovery sleep and the sedative actions of a 2 adrenergic agonists, Nature Neuroscience, 18:(4) 553-561, 2015

2014

Amendola, E and Zhan, Y and Mattucci, C and Castroflorio, E and Calcagno, E and Fuchs, C and Lonetti, G and Silingardi, D and Vyssotski, AL and Farley, D and Ciani, E and Pizzorusso, T and Giustetto, M and Gross, CT Mapping pathological phenotypes in a mouse model of CDKL5 disorder., PLoS One, 9:(5), 2014
Anisimov, Victor N and Herbst, Joshua A and Abramchuk, Andrei N and Latanov, Alexander V and Hahnloser, Richard H R and Vyssotski, Alexei L Reconstruction of vocal interactions in a group of small songbirds, Nature Methods(11) 1135–1137, 2014
Baker, R and Gent, TC and Yang, Q and Parker, S and Vyssotski, AL and Wisden, W and Brickley, SG and Franks, NP Altered activity in the central medial thalamus precedes changes in the neocortex during transitions into both sleep and propofol anesthesia., J Neurosci., 34:(40) 13326-13335, 2014
Burnos, Sergey and Hilfiker, Peter and Surucu, Oguzkan and Scholkmann, Felix and Krayenbuhl, Niklaus and Grunwald, Thomas and Sarnthein, Johannes Human Intracranial High Frequency Oscillations (HFOs) Detected by Automatic Time-Frequency Analysis, PLOS one, 2014 Burnos2014HFO
Canopoli, A and Herbst, JA and Hahnloser RH A higher sensory brain region is involved in reversing reinforcement-induced vocal changes in a songbird, Journal of Neuroscience, 20:(34) 7018-7026, 2014
Duriez, O and Kato, A and Tromp, C and Dell'Omo, G and Vyssotski, AL and Sarrazin, F and Ropert-Coudert, Y. How cheap is soaring flight in raptors? A preliminary investigation in freely-flying vultures., PLoS One, 9:(1), 2014
Gelegen, C and Gent, TC and Ferretti, V and Zhang, Z and Yustos, R and Lan, F and Yang, Q and Overington, DW and Vyssotski, AL and van Lith, HA and Wisden, W and Franks, NP. Staying awake--a genetic region that hinders α2 adrenergic receptor agonist-induced sleep., Eur J Neurosci., 40:(1) 2311-9, 2014
Giret, N and Kornfeld, J and Ganguli, S and Hahnloser RHR Evidence for a causal inverse model in an avian cortico-basal ganglia circuit, Proceedings of the National Academy of Sciences, 111:(16) 6063-6068, 2014
Kollmorgen, Sepp and Hahnloser, Richard Dynamic Alignment Models for Neural Coding, PLoS Computational Biology, 10:(3) e1003508, 2014
MV Butz, EF Kutter, C Lorenz Rubber hand illusion affects joint angle perception, PLoS One , 9:(3), 2014
Scriba, MF and Rattenborg, NC and Dreiss, AN and Vyssotski, AL and Roulin, A. Sleep and vigilance linked to melanism in wild barn owls., J Evol Biol., 27:(10) 2057-68, 2014
Voirin, B and Scriba, MF and Martinez-Gonzalez, D and Vyssotski, AL and Wikelski, M and Rattenborg, NC. Ecology and neurophysiology of sleep in two wild sloth species., Sleep, 37:(4) 753-61, 2014
Yu, X and Zecharia, A and Zhang, Z and Yang, Q and Yustos, R and Jager, P and Vyssotski, AL and Maywood, ES and Chesham, JE and Ma, Y and Brickley, SG and Hastings, MH and Franks, NP and Wisden, W. Circadian Factor BMAL1 in Histaminergic Neurons Regulates Sleep Architecture., Curr Biol., 24:(23) 2838-44, 2014
Zhan, Y and Paolicelli, RC and Sforazzini, F and Weinhard, L and Bolasco, G and Pagani, F and Vyssotski, AL and Bifone, A and Gozzi, A and Ragozzino, D and Gross, CT. Deficient neuron-microglia signaling results in impaired functional brain connectivity and social behavior., Nat Neurosci., 17:(3) 400-6, 2014

2013

Graber, Michael H. and Helmchen, Fritjof and Hahnloser, Richard H. R. Activity in a Premotor Cortical Nucleus of Zebra Finches Is Locally Organized and Exhibits Auditory Selectivity in Neurons but Not in Glia, PLOS one, 2013
Haenzi, S. and Ghosh, A. Tactile underrepresentation of the forehead along the vertical axis, Clinical Neurophysiology, 2013
Haenzi, S. and Stefanics, G. and Lanaras, T. and Calcagni, M. and Ghosh, A. Altered cortical activation from the hand after facial Botulinum Toxin treatment, Annals of Clinical and Translational Neurology, 2013
Hahnloser, R.H.R. and Ganguli, Surya Vocal learning with inverse models. , Principles of Neural Coding (Ed. S. Panzeri, P. Quiroga), 2013
Hanuschkin, A. and Ganguli, S. and Hahnloser, R. H. R. A Hebbian learning rule gives rise to mirror neurons and links them to control theoretic inverse models, Front. Neural Circuits, 7:(106), 2013
Lewandowski, Brian and Vyssotski, Alexei and Hahnloser, Richard H.R. and Schmidt, Marc At the interface of the auditory and vocal motor systems: NIf and its role in vocal processing, production and learning, Journal of Physiology - Paris, 2013
Ondracek, Janie M. and Hahnloser, Richard H. R. Advances in Understanding the Auditory Brain of Songbirds, Springer Handbook of Auditory Research 347-388, 2013
Scheffzük, C. and Kukushka, V.I. and Vyssotski, A.L. and Draguhn, A. and Tort, A.B. and Brankačk, J. Global slowing of network oscillations in mouse neocortex by diazepam, Neuropharmacology, 65: 123-33, 2013
Scriba, MF and Ducrest, AL and Henry, I and Vyssotski, AL and Rattenborg, NC and Roulin, A. Linking melanism to brain development: expression of a melanism-related gene in barn owl feather follicles covaries with sleep ontogeny, Front Zool. , 10:(1) 1-12, 2013

2012

Brankačk, J. and Scheffzük, C. and Kukushka, V.I. and Vyssotski, A.L. and Tort, A.B. and Draguhn, A. Distinct features of fast oscillations in phasic and tonic rapid eye movement sleep, J Sleep Res., 21:(6) 630-633, 2012
Ezequiel M Arneodo, Yonatan Sanz Perl, Franz Goller, Gabriel B Mindlin Prosthetic avian vocal organ controlled by a freely behaving bird based on a low dimensional model of the biomechanical periphery, Plos Computational Biology, 8:(6) e1002546, 2012
Lesku, J.A. and Rattenborg, N.C. and Valcu, M. and Vyssotski, A.L. and Kuhn, S. and Kuemmeth, F. and Heidrich, W. and Kempenaers, B. Adaptive sleep loss in polygynous pectoral sandpipers, Science, 337:(6102) 1654-1658, 2012
Lyamin, O.I. and Kosenko, P.O. and Vyssotski, A.L. and Lapierre, J.L. and Siegel, J.M. and Mukhametov, LM. Study of sleep in a walrus, Dokl Biol Sci., 444 : 188-191, 2012
M Stegen, F Kirchheim, A Hanuschkin, O Staszewski, R Veh, J Wolfart Adaptive intrinsic plasticity in human dentate gyrus granule cells during temporal lobe epilepsy, Cerebral Cortex, 22:(9) 2087-2101, 2012
Sachs, G. and Traugott, J. and Nesterova, A.P. and Dell'omo, G. and Kümmeth, F. and Heidrich, W. and Vyssotski, A.L. and Bonadonna, F. Flying at no mechanical energy cost: disclosing the secret of wandering albatrosses, PLoS One, 7:(9) 1-7, 2012
Scriba, M.F. and Harmening, W.M. and Mettke-Hofmann, C. and Vyssotski, A.L. and Roulin, A. and Wagner, H. and Rattenborg, N.C. Evaluation of two minimally invasive techniques for electroencephalogram recording in wild or freely behaving animals, J Comp Physiol A 1-7, 2012
Yonatan Sanz Perl, Ezequiel M Arneodo, Ana Amador, Gabriel B Mindlin Nonlinear dynamics and the synthesis of Zebra finch song, International Journal of Bifurcation and Chaos, 22:(10) 1250235, 2012
Zecharia, A.Y. and Yu, X. and Götz, T. and Ye, Z. and Carr, D.R. and Wulff, P. and Bettler, B. and Vyssotski, A.L. and Brickley, S.G. and Franks, N.P. and Wisden, W. GABAergic inhibition of histaminergic neurons regulates active waking but not the sleep-wake switch or propofol-induced loss of consciousness, J Neurosci., 32:(38) 13062-13075, 2012

2011

A Hanuschkin, J M Herrmann, A Morrison, and M Diesmann Compositionality of arm movements can be realized by propagating synchrony, Journal of Computational Neuroscience, 30:(3) 675-697, 2011
A Hanuschkin, M Diesmann, and A Morrison. A reafferent and feed-forward model of song syntax generation in the Bengalese finch, Journal of Computational Neuroscience, 31:(3) 509-532, 2011
Blättler, F. and Hahnloser, R.H.R. An Efficient Coding Hypothesis Links Sparsity and Selectivity of Neural Responses, PloS one, 6:(10) e25506, 2011
Ezequiel M. Arneodo, Yonatan Sanz Perl, and Gabriel B. Mindlin Acoustic signatures of sound source-tract coupling, Physical Review E, 83:(4) 041920, 2011
Lesku, J.A. and Meyer, L.C. and Fuller, A. and Maloney, S.K. and Dell'Omo, G. and Vyssotski, A.L and Rattenborg, N.C. Ostriches sleep like platypuses, PLoS One, 6:(8) e23203, 2011
Lesku, J.A. and Vyssotski, A.L. and Martinez-Gonzalez, D. and Wilzeck, C. and Rattenborg, N.C. Local sleep homeostasis in the avian brain: convergence of sleep function in mammals and birds?, Proceedings of the Royal Society B: Biological Sciences, 278:(1717) 2419-2428, 2011
Mitgutsch, C and Wimmer, C and Sánchez-Villagra, M R and Hahnloser, R H R and Schneider, R A Timing of ossification in duck, quail, and zebra finch: intraspecific variation, heterochronies, and life history evolution, Zoological science, 28: 491-500, 2011
Naie, K. and Hahnloser, R.H.R. Regulation of learned vocal behavior by an auditory motor cortical nucleus in juvenile zebra finches, Journal of Neurophysiology, 106:(1) 291-300, 2011
Oberti, D. and Kirschmann, M.A. and Hahnloser, R.H.R. Projection neuron circuits resolved using correlative array tomography, Frontiers in neuroscience, 5: 50, 2011
S. Reimann, V. Gontis, M. Alaburda Interplay between positive feedbacks in the generalized CEV process, Physica A: Statistical Mechanics and its Applications, 390:(8) 1393-1401, 2011
Scheffzük, C. and Kukushka, V.I. and Vyssotski, A.L. and Draguhn, A. and Tort, A.B.I. and Brankack, J. Selective Coupling between Theta Phase and Neocortical Fast Gamma Oscillations during REM-Sleep in Mice, PLoS One, 6:(12) e28489, 2011
Tsoar, A. and Nathan, R. and Bartan, Y. and Vyssotski, A. and Dell'Omo, G. and Ulanovsky, N. Large-scale navigational map in a mammal, Proceedings of the National Academy of Sciences, 108:(37) E718-E724, 2011
Yonatan Sanz Perl, Ezequiel M. Arneodo, Ana Amador, Franz Goller, and Gabriel B. Mindlin Reconstruction of physiological instructions from Zebra finch song, Physical Review E, 83:(5) 051909, 2011

2010

Brankack, J and Kukushka, V I and Vyssotski, A L and Draguhn, A EEG gamma frequency and sleep–wake scoring in mice: Comparing two types of supervised classifiers, Brain Research, 1322: 59-71, 2010 pdf
D'Souza, P and Liu, S C and Hahnloser, R H R Perceptron learning rule derived from spike-frequency adaptation and spike-time-dependent plasticity, Proceedings of the National Academy of Sciences of the United States of America, 107:(10) 4722-4727, 2010 pdf
Fiete, I R and Senn, W and Wang, C Z H and Hahnloser, R H R Spike time-dependent plasticity and heterosynaptic competition organize networks to produce long scale-free sequences of neural activity, Neuron, 65:(4) 563-576, 2010 pdf
Hahnloser, R H R and Kotowicz, A Auditory representations and memory in birdsong learning, Current Opinion in Neurobiology, 20:(3) 332-339, 2010 pdf
Hanuschkin, A. and Kunkel, S. and Helias, M. and Morrison, A. and Diesmann, M. A general and effcient method for incorporating precise spike times in globally time-driven simulations, Frontiers in Neuroinformatics, 4:(13), 2010
Jacobo D. Sitt, Ezequiel M. Arneodo, Franz Goller, and Gabriel B. Mindlin Physiologically driven avian vocal synthesizer, Physical Review E, 81:(3) 031927, 2010
Kotowicz, A and Rutishauser, U and Koch, C Time course of target recognition in visual search, Frontiers in Human Neuroscience, 4: 31, 2010 pdf
Ondracek, J M and Willuhn, I and Steiner, H and West, A R Interactions between procedural learning and cocaine exposure alter spontaneous and cortically evoked spike activity in the dorsal striatum, Frontiers in Neuroscience, 4: online, 2010
Sepp Kollmorgen, Nora Nortmann, Sylvia Schröder, Peter König Influence of low-level stimulus features, task dependent factors, and spatial biases on overt visual attention, PLoS computational biology, 6:(5) e1000791, 2010

2009

Ezequiel M. Arneodo and Gabriel B. Mindlin Source-tract coupling in birdsong production, Physical Review E, 79:(6) 061921, 2009

2008

Ezequiel M Arneodo, Leandro M Alonso, Jorge A Alliende, Gabriel B Mindlin The dynamical origin of physiological instructions used in birdsong production, Pramana, 70:(6) 1077-1085, 2008
Hahnloser, Richard H.R. and Wang, Claude Z.H. and Nager, Aymeric and Naie, Katja Spikes and Bursts in Two Types of Thalamic Projection Neurons Differentially Shape Sleep Patterns and Auditory Responses in a Songbird, Journal of Neuroscience, 28:(19) 5040-5052, 2008 pdf
Herbst, Joshua A. and Gammeter, Stephan and Ferrero, David and Hahnloser, Richard H.R. Spike sorting with hidden Markov models, Journal of Neuroscience Methods, 174:(1) 126-34, 2008 pdf
Hetzler, B.E. and Ondracek, J.M. and Becker, E.A. Baclofen does not counteract the acute effects of ethanol on flash-evoked potentials in Long-Evans rats, International Journal of Neuroscience, 118:(11) 1558-1581, 2008 pdf
Keller, GB and Hahnloser, RHR Neural processing of auditory feedback during vocal practice in a songbird, Nature, 456:(7219) 187-190, 2008 pdf
Ondracek, J.M. and Dec, A. and Hoque, K.E. and Lim, S.A. and Rasouli, M. and Indorkar, R.P. and Linardakis, J. and Klika, B. and Mukherji, S.J. and Burnazi, M. and Threlfell, S and Sammut, S and West, A.R. Feed-forward excitation of striatal neuron activity by frontal cortical activation of nitric oxide signaling in vivo, European Journal of Neuroscience, 27:(7) 1739-54, 2008 pdf
Wang, Claude Z. H. and Herbst, Joshua A. and Keller, Georg B. and Hahnloser, Richard H.R. Rapid Interhemispheric Switching during Vocal Production in a Songbird, PLoS Biology, 6:(10) 2154-2162, 2008 pdf

2007

A Hanuschkin, D Wortmann, and S Bluegel Image potential and field states at Ag(100) and Fe(110) surfaces, Physical Review B, 76:(16) 165417, 2007
Hahnloser, R.H. Cross-intensity functions and the estimate of spike-time jitter, Biological Cybernetics, 96:(5) 497-506, 2007 pdf
Hahnloser, R.H.R. and Fee, M.S. Sleep-related spike bursts in HVC are driven by the nucleus interface of the nidopallium, Journal of Neurophysiology, 97:(1) 423-435, 2007 pdf
Hetzler, B.E. and Ondracek, J.M. Baclofen alters flash-evoked potentials in Long-Evans rats, Pharmacology Biochemistry and Behavior , 84:(4) 727-740, 2007 pdf
Weber, A.P. and Hahnloser, R.H. Spike correlations in a songbird agree with a simple Markov population model, PLoS Computational Biology, 3:(12) e249 doi:10.1371/journal.pcbi.0030249, 2007 pdf

2006

Hahnloser, R.H.R. and Kozhevnikov, A. and Fee, M.S. Sleep-related neural activity in a premotor and a basal-ganglia pathway of the songbird.of birdsong., Journal of Neurophysiology, 96:(2) 794-812, 2006 pdf
Wang, Claude Z.H. and Chang, M.H. and Yang, J.W. and Sun, J.J. and Lee, H.C. and Shyu, B.C. Layer IV of the Primary Somatosensory Cortex has the Highest Complexity under Anesthesia and Cortical Complexity is Modulated by Specific Thalamic Inputs, Brain Research, 1082:(1) 102-114, 2006 pdf

2005

Danóczy, M and Hahnloser, R.H.R. Efficient estimation of hidden state dynamics from spike trains , NIPS Proceedings, 17:, 2005 pdf
Kissinger, Thomas and Kotowicz, Andreas and Kurz, Oliver and Ginelli , Francesco and Hinrichsen, Haye Nonequilibrium wetting of ﬁnite samples, Journal of Statistical Mechanics: Theory and Experiment, 2005 pdf

2004

Fee, Michale and Kozhevnikov, Alex and Hahnloser, Richard Neural mechanisms of vocal sequence generation in the songbird., Behavioral Neurobiology of Birdsong 153-170, 2004
Fiete, I and Hahnloser, R and Fee, M and Seung, S Temporal sparseness of the premotor drive is important for rapid learning in a neural network model of birdsong., Journal of Neurophysiology, 92:(4) 2274-82, 2004 pdf

2003

Stoop, R. and Buchli, J. and Keller, G. and Steeb, W.-H. Stochastic Resonance in Pattern Recognition by a Holographic Neuron , Physical Review E, 67: 061918-1-061918-6, 2003 pdf

2002

Hahnloser, RH and Douglas, RJ and Hepp, K Attentional recruitment of inter-areal recurrent networks for selective gain control., Neural Computation, 14:(7) 1669-89, 2002 pdf
S. Reimann, A. Tupak Can constrained percolation be approximated by Bernoulli percolation?, Journal of Physics A: Mathematical and General, 35:(48) 10219, 2002

2001

Rasche, C. and Hahnloser, R. Silicon Synaptic Depression, Biological Cybernetics, 84:(1) 57-62, 2001 pdf
S. Reimann, J. Bendisch On global site-percolation on the correlated honeycomb lattice, Physica A: Statistical Mechanics and its Applications, 296:(3-4) 391-404, 2001

2000

Hahnloser, Richard and Sarpeshkar, R. and Mahowald, Misha and Douglas, Rodney J. and Seung, S. Digital selection and analog amplification co-exist in an electronic circuit inspired by neocortex, Nature, 405: 947-951, 2000 pdf

1999

Hahnloser, R and Douglas, R and Mahowald, M and Hepp, K Feedback interactions between neuronal pointers and maps for attentional processing, Nature Neuroscience, 2: 746-752, 1999 pdf
Mudra, R. and Hahnloser, R. and Douglas, R.J. Neuromorphic Active Vision Used in Simple Navigation Behavior for a Robot, Proceedings of the 7th International Conference on Microelectronics for Neural Networks, 1: 32-36, 1999 pdf

1998

Hahnloser, R.H.R. Generating Network Trajectories Using Gradient Descent in State Space, IJCNN - International Joint Conference on Neural Networks 2373-2377, 1998
Hahnloser, Richard H.R. Learning Algorithms Based on Linearization, Network, Computation in Neural Systems, 9(3): 363-380, 1998
Hahnloser, Richard H.R. About the Piecewise Analysis of Networks of Linear Threshold Neurons, Neural Networks, 11: 691-697, 1998 pdf
S. Reimann On the design of artificial auto-associative neuronal networks, Neural Networks, 11:(4) 611-621, 1998
S. Reimann Oscillation and pattern formation in a system of self-regulating cells, Physica D: Nonlinear Phenomena, 114:(3-4), 1998

1997

S. Reimann Symmetry and network structure, Neural Processing Letters, 6:(1) 1-10, 1997