Markus Marks, Qiuhan Jin, Oliver Sturman, Lukas von Ziegler, Sepp Kollmorgen, Wolfger von der Behrens, Valerio Mante, Johannes Bohacek & Mehmet Fatih Yanik Deep-learning-based identification, tracking, pose estimation and behaviour classification of interacting primates and mice in complex environments, Nature Machine Intelligence , 4: 331-340, 2022

D Schmidt, G English, T Gent, MF Yanik, W von der Behrens Electrocorticography based monitoring of anaesthetic depth in mice, bioRxiv 1-14, 2021

Horea-Ioan Ioanas, Markus Marks, Valerio Zerbi, Mehmet Fatih Yanik, Markus Rudin An optimized registration workflow and standard geometric space for small animal brain imaging, NeuroImage, 2021

M Marks, J Qiuhan, O Sturman, L von Ziegler, S Kollmorgen, W von der Behrens, V Mante, J Bohacek, MF Yanik Deep-learning based identification, pose estimation and end-to-end behavior classification for interacting primates and mice in complex environments, bioRxiv 1-33, 2021

Benjamin Estermann, Markus Marks, Mehmet Fatih Yanik Robust Disentanglement of a Few Factors at a Time, NeurIPS Proceedings, 2020 pdf

Ioanas, Horea-Ioan and Marks, Markus and Garin, Clément M. and Dhenain, Marc and Yanik, Mehmet Fatih and Rudin, Markus An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data, Frontiers in Neuroinformatics, 2020

Marks, Markus and Qiuhan, Jin and Sturman, Oliver and von Ziegler, Lukas and Kollmorgen, Sepp and von der Behrens, Wolfger and Mante, Valerio and Bohacek, Johannes and Yanik, Mehmet Fatih SIPEC: the deep-learning Swiss knife for behavioral data analysis, 2020

Ozdas, Mehmet S. and Shah, Aagam S. and Johnson, Paul M. and Patel, Nisheet and Marks, Markus and Yasar, Tansel Baran and Stalder, Urs and Bigler, Laurent and von der Behrens, Wolfger and Sirsi, Shashank R. and Yanik, Mehmet Fatih Non-invasive molecularly-specific millimeter-resolution manipulation of brain circuits by ultrasound-mediated aggregation and uncaging of drug carriers, Nature Communications, 2020

Ioanas, Horea-Ioan and Marks, Markus and Garin, Clément M. and Dhenain, Marc and Yanik, Mehmet Fatih and Rudin, Markus An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data, 2019

Ioanas, Horea-Ioan and Marks, Markus and Yanik, Mehmet Fatih and Rudin, Markus An Optimized Registration Workflow and Standard Geometric Space for Small Animal Brain Imaging, 2019

Mostafa Ghannad-Rezaie, Peter M. Eimon, Yuelong Wu & Mehmet Fatih Yanik Engineering brain activity patterns by neuromodulator polytherapy for treatment of disorders, Nature Communications, 2019

Matheus Gauy Marcelo, Lengler Johannes, Einarsson Hafsteinn, Meier Florian, Weissenberger Felix, Yanik Mehmet Fatih, Steger Angelika A Hippocampal Model for Behavioral Time Acquisition and Fast Bidirectional Replay of Spatio-Temporal Memory Sequences, Frontiers in Neuroscience, 12:, 2018

Mehmet Turan, Evin Pinar Ornek, Nail Ibrahimli, Can Giracoglu, Yasin Almalioglu, Mehmet Fatih Yanik, Metin Sitti Unsupervised Odometry and Depth Learning for Endoscopic Capsule Robots, arXiv, 2018

Mehmet Turan, Yasin Almalioglu, Evin Pinar Ornek, Helder Araujo, Mehmet Fatih Yanik, Metin Sitti Magnetic-visual sensor fusion-based dense 3d reconstruction and localization for endoscopic capsule robots, arXiv, 2018

Peter M. Eimon, Mostafa Ghannad-Rezaie, Gianluca De Rienzo, Amin Allalou, Yuelong Wu, Mu Gao, Ambrish Roy, Jeffrey Skolnick & Mehmet Fatih Yanik Brain activity patterns in high-throughput electrophysiology screen predict both drug efficacies and side effects, Nature Communications, 2018

Sayyed M Azimi, Steven D Sheridan, Mostafa Ghannad-Rezaie, Peter M Eimon, Mehmet Fatih Yanik Combinatorial programming of human neuronal progenitors using magneticallyguided stoichiometric mRNA delivery, eLife, 2018

A Allalou, Y Wu, M Ghannad-Rezaie, PM Eimon, MF Yanik Automated deep-phenotyping of the vertebrate brain, eLife, 6: e23379, 2017

Mark A. Skylar-Scott; Man-Chi Liu; Yuelong Wu; Mehmet Fatih Yanik Multi-photon microfabrication of three-dimensional capillary-scale vascular networks, Proceedings Volume 10115, Advanced Fabrication Technologies for Micro/Nano Optics and Photonics X, 2017