ini.trakem2.analysis
Class Compare.CATAParameters

java.lang.Object
  extended by ini.trakem2.analysis.Compare.CATAParameters
Enclosing class:
Compare

public static class Compare.CATAParameters
extends java.lang.Object

Compare all to all parameters.


Field Summary
 boolean chain_branches
           
 boolean cut_uneven_ends
           
 double delta
           
 double delta_envelope
           
 boolean direct
           
 int distance_type
           
 int distance_type_2
           
 int envelope_type
           
 java.lang.String format
           
 java.lang.String[] formats
           
 int max_mut
           
 float min_chunk
           
 int min_matches
           
 boolean normalize
           
 int plot_height
           
 double plot_max_x
           
 double plot_max_y
           
 int plot_width
           
 java.lang.String[] preset
           
 java.lang.String[] preset_names
           
 java.lang.String[][] presets
           
 java.lang.String regex
           
 boolean score_mut_only
           
 boolean skip_ends
           
 boolean substring_matching
           
 int transform_type
           
 boolean with_source
           
 
Constructor Summary
Compare.CATAParameters()
           
 
Method Summary
 boolean setup(boolean to_file, java.lang.String regex, boolean plot, boolean condense)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

delta

public double delta

skip_ends

public boolean skip_ends

max_mut

public int max_mut

min_chunk

public float min_chunk

score_mut_only

public boolean score_mut_only

transform_type

public int transform_type

chain_branches

public boolean chain_branches

presets

public final java.lang.String[][] presets

preset

public java.lang.String[] preset

preset_names

public final java.lang.String[] preset_names

formats

public final java.lang.String[] formats

format

public java.lang.String format

distance_type

public int distance_type

distance_type_2

public int distance_type_2

min_matches

public int min_matches

normalize

public boolean normalize

direct

public boolean direct

substring_matching

public boolean substring_matching

regex

public java.lang.String regex

with_source

public boolean with_source

plot_max_x

public double plot_max_x

plot_max_y

public double plot_max_y

plot_width

public int plot_width

plot_height

public int plot_height

cut_uneven_ends

public boolean cut_uneven_ends

envelope_type

public int envelope_type

delta_envelope

public double delta_envelope
Constructor Detail

Compare.CATAParameters

public Compare.CATAParameters()
Method Detail

setup

public boolean setup(boolean to_file,
                     java.lang.String regex,
                     boolean plot,
                     boolean condense)